SCF Biochem & Genetics Library

Discussions on topics related to biochemistry and molecular biology, functional genomics, etc.

SCF Biochem & Genetics Library

Postby Silkworm on August 15th, 2006, 8:39 pm 

This thread is intended to be a database for links pertaining to information covered by this sub-forum. Links to tutorials, videos, interactive media, etc. will be listed and categorized here. Please feel free to submit any additions for this library in this format:

Name of the Website, Link, 1 sentence description and then possibly a suggestion of what category (tutorials, videos, etc.) the link should go in.

Example:

The eSkeletons Project, http://www.eskeletons.org/, An interactive examination of primate morphology, Interactive Media

This is an example of how the link will be listed with the name of the contributor in parentheses at the end.

Interactive Media

The eSkeletons Project, http://www.eskeletons.org/. An interactive examination of primate morphology. (Silkworm)

Submissions will be listed by category on this particular post, which will be edited to serve as the SCF Biochem & Genetics Library, a living document. And as it is living, it will change. Categories added and links added and removed as there is demand for it.

A few quick notes:

1.Please contribute your links. Our combined efforts will make this a valuable and comprehensive internet resource.
2.Please report broken links, make comments, here.
3.If you feel a site is at the apex of quality please endorse it. Recommended links will have a “*” added to them. These should not be taken lightly and only added to the best of the best.


SCF Biochem & Genetics Library


Database

Human Genome Project, http://www.ncbi.nlm.nih.gov/genome/guide/human/. An online database including statistical and other analyses on information extracted from the Human Genome Project.(BioWizard)

Human Genome Project Information, http://www.ornl.gov/sci/techresources/Human_Genome/home.sht. Completed in 2003, the Human Genome Project (HGP) was a 13-year project coordinated by the U.S. Department of Energy and the National Institutes of Health.

PROSITE, http://kr.expasy.org/prosite/. Database of protein families and domains.(BioWizard)

Protein Data Bank, http://www.rcsb.org/. Database of all experimentall and theoretically determined protein structures, equipped with a variety of tools and resources for studying the structures of biological macromolecules and their relationships to sequence, function, and disease. (BioWizard)

NCBI Entrez, http://www.ncbi.nlm.nih.gov. A collection of sequences from several sources, including GenBank, RefSeq, and PDB. (BioWizard)

Nucleic Acid Database, http://ndbserver.rutgers.edu/. A repository of three-dimensional structural information about nucleic acids.

Structural Classification of Proteins (SCOP), http://scop.mrc-lmb.cam.ac.uk/scop/. Provides a broad survey of all known protein folds, detailed information about the close relatives of any particular protein, and a framework for future research and classification. (BioWizard)

Journals

ESP, http://www.esp.org/books/sturt/history/. Contains many groundbreaking genetics articles in PDF format.

People

Christian de Duve, http://video.google.com/videoplay?docid=8384157135529927208&q=ed+teller. The Belgian biochemist Christian de Duve, reflects on the impact of winning the Nobel Prize.

Podcast

VirologyBytes, http://www-micro.msb.le.ac.uk/podcasts/vb/vb.xml. VirologyBytes brings you the latest news from the field of virology, in a form that everyone can understand.

Projects

The Genographic Project, https://www3.nationalgeographic.com/genographic/sample_results.html

Software

Protein Sequence Culling Server (PISCES), http://dunbrack.fccc.edu/PISCES.php. PISCES has several capabilities in producing subsets of sequences from larger sets. (BioWizard)
Last edited by Silkworm on September 16th, 2006, 6:40 pm, edited 8 times in total.
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Postby BioWizard on August 15th, 2006, 9:44 pm 

NCBI Entrez, http://www.ncbi.nlm.nih.gov, a collection of sequences from several sources, including GenBank, RefSeq, and PDB, Dabatases.

Human Genome Project, http://www.ncbi.nlm.nih.gov/genome/guide/human/, An online database including statistical and other analyses on information extracted from the Human Genome Project, Databases.

Protein Data Bank, http://www.rcsb.org/, Database of all experimentall and theoretically determined protein structures, equipped with a variety of tools and resources for studying the structures of biological macromolecules and their relationships to sequence, function, and disease.

PROSITE, http://kr.expasy.org/prosite/, Database of protein families and domains, Databases.

Protein Sequence Culling Server (PISCES), http://dunbrack.fccc.edu/PISCES.php, PISCES has several capabilities in producing subsets of sequences from larger sets, Software.

Structural Classification of Proteins (SCOP), http://scop.mrc-lmb.cam.ac.uk/scop/, Provides a broad survey of all known protein folds, detailed information about the close relatives of any particular protein, and a framework for future research and classification, Databases.

(NOTE FROM SILKWORM: Updated to here)
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Re: SCF Biochem & Genetics Library

Postby bose on May 2nd, 2010, 12:07 am 

How to do calculations between moles, atoms or molecules, and grams of a substance
http://misterguch.brinkster.net/molecalculations.html
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PhenomicDB: free multi-organism phenotype-genotype database

Postby iv_ka_metalife on September 30th, 2011, 8:52 am 

http://www.phenomicdb.de

PhenomicDB is a free multi-organism phenotype-genotype data repository unifying a variety of primary sources to make phenotypic data from a wide range of species and model organisms simultaneously searchable, visible and comparable. Reported genotype-phenotype relationships are supported by literature evidence, reference links and citations. Each genotype and each phenotype is characterized by description details allowing related facts exploration. Phenotypic data clusters are mapped to each entry to help further analyze similar phenotypes/diseases caused by different genes or mutations. Gene orthology information is appended to each entry to help suggest a known phenotype/disease to a new or orphan genotype/mutation and thus predict a new unreported phenotypic manifestation.

See references: http://www.phenomicdb.de/cite_us.asp
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